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    Cell. 2021 May 22. pii: S0092-8674(21)00585-7. doi: 10.1016/j.cell.2021.05.002
    A global metagenomic map of urban microbiomes and antimicrobial resistance.
    Danko D1,  Bezdan D2,  Afshin EE3,  Ahsanuddin S4,  Bhattacharya C5,  Butler DJ6,  Chng KR7,  Donnellan D8,  Hecht J9,  Jackson K10,  Kuchin K11,  Karasikov M12,  Lyons A13,  Mak L14,  Meleshko D15,  Mustafa H16,  Mutai B17,  Neches RY18,  Ng A19,  Nikolayeva O20,  Nikolayeva T21,  Png E22,  Ryon KA23,  Sanchez JL24,  Shaaban H25,  Sierra MA26,  Thomas D27,  Young B28,  Abudayyeh OO29,  Alicea J30,  Bhattacharyya M31,  Blekhman R32,  Castro-Nallar E33,  Cañas AM34,  Chatziefthimiou AD35,  Crawford RW36,  De Filippis F37,  Deng Y38,  Desnues C39,  Dias-Neto E40,  Dybwad M41,  Elhaik E42,  Ercolini D43,  Frolova A44,  Gankin D45,  Gootenberg JS46,  Graf AB47,  Green DC48,  Hajirasouliha I49,  Hastings JJA50,  Hernandez M51,  Iraola G52,  Jang S53,  Kahles A54,  Kelly FJ55,  Knights K56,  Kyrpides NC57,  Łabaj PP58,  Lee PKH59,  Leung MHY60,  Ljungdahl PO61,  Mason-Buck G62,  McGrath K63,  Meydan C64,  Mongodin EF65,  Moraes MO66,  Nagarajan N67,  Nieto-Caballero M68,  Noushmehr H69,  Oliveira M70,  Ossowski S71,  Osuolale OO72,  Özcan O73,  Paez-Espino D74,  Rascovan N75,  Richard H76,  Rätsch G77,  Schriml LM78,  Semmler T79,  Sezerman OU80,  Shi L81,  Shi T82,  Siam R83,  Song LH84,  Suzuki H85,  Court DS86,  Tighe SW87,  Tong X88,  Udekwu KI89,  Ugalde JA90,  Valentine B91,  Vassilev DI92,  Vayndorf EM93,  Velavan TP94,  Wu J95,  Zambrano MM96,  Zhu J97,  Zhu S98,  Mason CE99
    Collaborators
    Abdullah N Abraao M Adel AH Afaq M Al-Quaddoomi FS Alam I Albuquerque GE Alexiev A Ali K Alvarado-Arnez LE Aly S Amachee J Amorim MG Ampadu M Amran MA An N Andrew W Andrianjakarivony H Angelov M Antelo V Aquino C Aranguren Á Araujo LF Vasquez Arevalo HF Arevalo J Arnan C Alvarado Arnez LE Arredondo F Arthur M Asenjo F Aung TS Auvinet J Aventin N Ayaz S Baburyan S Bakere AM Bakhl K Bartelli TF Batdelger E Baudon F Becher K Bello C Benchouaia M Benisty H Benoiston AS Benson J Benítez D Bernardes J Bertrand D Beurmann S Bitard-Feildel T Bittner L Black C Blanc G Blyther B Bode T Boeri J Boldgiv B Bolzli K Bordigoni A Borrelli C Bouchard S Bouly JP Boyd A Branco GP Breschi A Brindefalk B Brion C Briones A Buczansla P Burke CM Burrell A Butova A Buttar I Bynoe J Bönigk S Bøifot KO Caballero H Cai XW Calderon D Cantillo A Carbajo M Carbone A Cardenas A Carrillo K Casalot L Castro S Castro AV Castro A Castro AVB Cawthorne S Cedillo J Chaker S Chalangal J Chan A Chasapi AI Chatziefthimiou S Chaudhuri SR Chavan AK Chavez F Chem G Chen X Chen M Chen JW Chernomoretz A Chettouh A Cheung D Chicas D Chiu S Choudhry H Chrispin C Ciaramella K Cifuentes E Cohen J Coil DA Collin S Conger C Conte R Corsi F Cossio CN Costa AF Cuebas D D'Alessandro B Dahlhausen KE Darling AE Das P Davenport LB David L Davidson NR Dayama G Delmas S Deng CK Dequeker C Desert A Devi M Dezem FS Dias CN Donahoe TR Dorado S Dorsey L Dotsenko V Du S Dutan A Eady N Eisen JA Elaskandrany M Epping L Escalera-Antezana JP Ettinger CL Faiz I Fan L Farhat N Faure E Fauzi F Feigin C Felice S Ferreira LP Figueroa G Fleiss A Flores D Velasco Flores JL Fonseca MAS Foox J Forero JC Francis A French K Fresia P Friedman J Fuentes JJ Galipon J Garcia M Garcia L García C Geiger A Gerner SM Ghose SL Giang DP Giménez M Giovannelli D Githae D Gkotzis S Godoy L Goldman S Gonnet GH Gonzalez J Gonzalez A Gonzalez-Poblete C Gray A Gregory T Greselle C Guasco S Guerra J Gurianova N Haehr W Halary S Hartkopf F Hastings JJA Hawkins-Zafarnia A Hazrin-Chong NH Helfrich E Hell E Henry T Hernandez S Hernandez PL Hess-Homeier D Hittle LE Hoan NX Holik A Homma C Hoxie I Huber M Humphries E Hyland S Hässig A Häusler R Hüsser N Petit RA Iderzorig B Igarashi M Iqbal SB Ishikawa S Ishizuka S Islam S Islam R Ito K Ito S Ito T Ivankovic T Iwashiro T Jackson S Jacobs J James M Jaubert M Jerier ML Jiminez E Jinfessa A De Jong Y Joo HW Jospin G Kajita T Ahmad Kassim AS Kato N Kaur A Kaur I de Souza Gomes Kehdy F Khadka VS Khan S Khavari M Ki M Kim G Kim HJ Kim S King RJ Knights K KoLoMonaco G Koag E Kobko-Litskevitch N Korshevniuk M Kozhar M Krebs J Kubota N Kuklin A Kumar SS Kwong R Kwong L Lafontaine I Lago J Lai TY Laine E Laiola M Lakhneko O Lamba I de Lamotte G Lannes R De Lazzari E Leahy M Lee H Lee Y Lee L Lemaire V Leong E Leung MHY Lewandowska D Li C Liang W Lin M Lisboa P Litskevitch A Liu EM Liu T Livia MA Lo YH Losim S Loubens M Lu J Lykhenko O Lysakova S Mahmoud S Majid SA Makogon N Maldonado D Mallari K Malta TM Mamun M Manoir D Marchandon G Marciniak N Marinovic S Marques B Mathews N Matsuzaki Y Matthys V May M McComb E Meagher A Melamed A Menary W Mendez KN Mendez A Mendy IM Meng I Menon A Menor M Meoded R Merino N Meydan C Miah K Mignotte M Miketic T Miranda W Mitsios A Miura R Miyake K Moccia MD Mohan N Mohsin M Moitra K Moldes M Molina L Molinet J Molomjamts OE Moniruzzaman E Moon S de Oliveira Moraes I Moreno M Mosella MS Moser JW Mozsary C Muehlbauer AL Muner O Munia M Munim N Muscat M Mustac T Muñoz C Nadalin F Naeem A Nagy-Szakal D Nakagawa M Narce A Nasu M Navarrete IG Naveed H Nazario B Nedunuri NR Neff T Nesimi A Ng WC Ng S Nguyen G Ngwa E Nicolas A Nicolas P Nika A Noorzi H Nosrati A Noushmehr H Nunes DN O'Brien K O'Hara NB Oken G Olawoyin RA Oliete JQ Olmeda K Oluwadare T Oluwadare IA Ordioni N Orpilla J Orrego J Ortega M Osma P Osuolale IO Osuolale OM Ota M Oteri F Oto Y Ounit R Ouzounis CA Pakrashi S Paras R Pardo-Este C Park YJ Pastuszek P Patel S Pathmanathan J Patrignani A Perez M Peros A Persaud S Peters A Phillips A Pineda L Pizzi MP Plaku A Plaku A Pompa-Hogan B Portilla MG Posada L Priestman M Prithiviraj B Priya S Pugdeethosal P Pugh CE Pulatov B Pupiec A Pyrshev K Qing T Rahiel S Rahmatulloev S Rajendran K Ramcharan A Ramirez-Rojas A Rana S Ratnanandan P Read TD Rehrauer H Richer R Rivera A Rivera M Robertiello A Robinson C Rodríguez P Rojas NA Roldán P Rosario A Roth S Ruiz M Boja Ruiz SE Russell K Rybak M Sabedot TS Sabina M Saito I Saito Y Malca Salas GA Salazar C San KM Sanchez J Sanchir K Sankar R de Souza Santos PT Saravi Z Sasaki K Sato Y Sato M Sato S Sato R Sato K Sayara N Schaaf S Schacher O Schinke AM Schlapbach R Schori C Schriml JR Segato F Sepulveda F Serpa MS De Sessions PF Severyn JC Shaaban H Shakil M Shalaby S Shari A Shim H Shirahata H Shiwa Y Siam R Da Silva O Silva JM Simon G Singh SK Sluzek K Smith R So E Andreu Somavilla N Sonohara Y Rufino de Sousa N Souza C Sperry J Sprinsky N Stark SG La Storia A Suganuma K Suliman H Sullivan J Supie AAM Suzuki C Takagi S Takahara F Takahashi N Takahashi K Takeda T Takenaka IK Tanaka S Tang A Man Tang Y Tarcitano E Tassinari A Taye M Terrero A Thambiraja E Thiébaut A Thomas S Thomas AM Togashi Y Togashi T Tomaselli A Tomita M Tomita I Tong X Toth O Toussaint NC Tran JM Truong C Tsonev SI Tsuda K Tsurumaki T Tuz M Tymoshenko Y Urgiles C Usui M Vacant S Valentine B Vann LE Velter F Ventorino V Vera-Wolf P Vicedomini R Suarez-Villamil MA Vincent S Vivancos-Koopman R Wan A Wang C Warashina T Watanabe A Weekes S Werner J Westfall D Wieler LH Williams M Wolf SA Wong B Wong YL Wong T Wright R Wunderlin T Yamanaka R Yang J Yano H Yeh GC Yemets O Yeskova T Yoshikawa S Zafar L Zhang Y Zhang S Zhang A Zheng Y Zubenko S
    Author information
    1Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    2Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA; Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany; NGS Competence Center Tübingen (NCCT), University of Tübingen, Tübingen, Germany.
    3Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    4Icahn School of Medicine at Mount Sinai, New York, NY, USA.
    5Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    6Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    7Genome Institute of Singapore, A(∗)STAR, Singapore, Singapore.
    8Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    9Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
    10Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    11Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    12ETH Zurich, Department of Computer Science, Biomedical Informatics Group, Zurich, Switzerland; University Hospital Zurich, Biomedical Informatics Research, Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
    13Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    14Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    15Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    16ETH Zurich, Department of Computer Science, Biomedical Informatics Group, Zurich, Switzerland; University Hospital Zurich, Biomedical Informatics Research, Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
    17Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Kenya Medical Research Institute - Kisumu, Kisumu, Kenya.
    18Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
    19Genome Institute of Singapore, A(∗)STAR, Singapore, Singapore.
    20Independent Researcher, Zurich, Switzerland.
    21Independent Researcher, Zurich, Switzerland.
    22Genome Institute of Singapore, A(∗)STAR, Singapore, Singapore.
    23Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    24Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    25Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    26Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    27Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    28Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    29Massachusetts Institute of Technology, McGovern Institute for Brain Research, Cambridge, MA, USA.
    30Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    31Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India; Centre for Artificial Intelligence and Machine Learning, Indian Statistical Institute, Kolkata, India.
    32University of Minnesota, Minneapolis, MN, USA.
    33Universidad Andres Bello, Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Santiago, Chile.
    34Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    35Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    36California State University, Sacramento, Sacramento, CA, USA.
    37Department of Agricultural Sciences, Division of Microbiology, University of Naples Federico II, Naples, Italy; Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy.
    38University of Hawaii John A. Burns School of Medicine, Honolulu, HI, USA.
    39Aix-Marseille Université, Mediterranean Institute of Oceanology, Université de Toulon, CNRS, IRD, UM 110, Marseille, France.
    40Medical Genomics group, A.C.Camargo Cancer Center, São Paulo - SP, Brazil.
    41Norwegian Defence Research Establishment FFI, Kjeller, Norway.
    42Department of Biology, Lund University, Lund, Sweden.
    43Department of Agricultural Sciences, Division of Microbiology, University of Naples Federico II, Naples, Italy; Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy.
    44Institute of Molecular Biology and Genetics of National Academy of Sciences of Ukraine, Kyiv, Ukraine; Kyiv Academic University, Kyiv, Ukraine.
    45Massachusetts Institute of Technology, McGovern Institute for Brain Research, Cambridge, MA, USA.
    46Massachusetts Institute of Technology, McGovern Institute for Brain Research, Cambridge, MA, USA.
    47University of Applied Sciences Vienna, Vienna, Austria.
    48Department of Analytical, Environmental and Forensic Sciences, King's College London, London, UK.
    49Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    50Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    51University of Colorado at Boulder, Boulder, CO, USA.
    52Microbial Genomics Laboratory, Institut Pasteur de Montevideo, Montevideo, Uruguay; Center for Integrative Biology, Universidad Mayor, Santiago de Chile, Santiago, Chile; Wellcome Sanger Institute, Hinxton, UK.
    53Institut Pasteur Korea, Seoul, South Korea.
    54ETH Zurich, Department of Computer Science, Biomedical Informatics Group, Zurich, Switzerland; Kyiv Academic University, Kyiv, Ukraine; C+, Research Center in Technologies for Society, School of Engineering, Universidad del Desarrollo, Santiago, Chile.
    55Department of Analytical, Environmental and Forensic Sciences, King's College London, London, UK.
    56Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    57Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
    58State Key Laboratory of Genetic Engineering (SKLGE) and MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences, Shanghai, China; Małopolska Centre of Biotechnology, Jagiellonian University, Kraków, Poland; Boku University Viennna, Vienna, Austria.
    59School of Energy and Environment, City University of Hong Kong, Hong Kong SAR, China.
    60School of Energy and Environment, City University of Hong Kong, Hong Kong SAR, China.
    61Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.
    62Department of Analytical, Environmental and Forensic Sciences, King's College London, London, UK.
    63Microba, 388 Queen St, Brisbane City, QLD 4000, Australia.
    64Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    65University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, MD, USA.
    66Fundação Oswaldo Cruz, Rio de Janeiro - RJ, Brazil.
    67Genome Institute of Singapore, A(∗)STAR, Singapore, Singapore.
    68University of Colorado at Boulder, Boulder, CO, USA.
    69University of São Paulo, Ribeirão Preto Medical School, Ribeirão Preto - SP, Brazil.
    70Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal.
    71Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany; NGS Competence Center Tübingen (NCCT), University of Tübingen, Tübingen, Germany.
    72Applied Environmental Metagenomics and Infectious Diseases Research (AEMIDR), Department of Biological Sciences, Elizade University, Ilara-Mokin, Nigeria.
    73Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey.
    74Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
    75Microbial Paleogenomics Unit, Institut Pasteur, CNRS UMR2000, Paris 75015, France.
    76Sorbonne University, Faculty of Science, Institute of Biology Paris-Seine, Laboratory of Computational and Quantitative Biology, Paris, France; Robert Koch Institute, Berlin, Germany.
    77ETH Zurich, Department of Computer Science, Biomedical Informatics Group, Zurich, Switzerland; University Hospital Zurich, Biomedical Informatics Research, Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
    78University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, MD, USA.
    79Robert Koch Institute, Berlin, Germany.
    80Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey.
    81Center for Pharmacogenomics, School of Life Sciences and Shanghai Cancer Center, Fudan University, Shanghai, China; State Key Laboratory of Genetic Engineering (SKLGE) and MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences, Shanghai, China.
    82The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, the Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
    83University of Medicine and Health Sciences, St. Kitts, West Indies and American University in Cairo, Cairo, Egypt.
    84108 Military Central Hospital, Hanoi, Vietnam; Vietnamese-German Center for Medical Research (VG-CARE), Hanoi, Vietnam.
    85Keio University, Tokyo, Japan.
    86Department of Analytical, Environmental and Forensic Sciences, King's College London, London, UK.
    87University of Vermont, Burlington, VT, USA.
    88School of Energy and Environment, City University of Hong Kong, Hong Kong SAR, China.
    89Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm, Sweden; SciLife EVP, Department of Aquatic Sciences Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden.
    90Millennium Initiative for Collaborative Research on Bacterial Resistance, Santiago, Chile; C+, Research Center in Technologies for Society, School of Engineering, Universidad del Desarrollo, Santiago, Chile.
    91Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    92Faculty of Mathematics and Informatics, Sofia University "St. Kliment Ohridski," Sofia, Bulgaria.
    93Institute of Arctic Biology, University of Alaska, Fairbanks, Fairbanks, AK, USA.
    94Institute of Tropical Medicine, Univeristätsklinikum Tübingen, Tübingen, Germany; Faculty of Medicine, Duy Tan University, Da Nang, Vietnam.
    95The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, the Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
    96Corporación Corpogen-Research Center, Bogotá, Colombia.
    97Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA.
    98State Key Laboratory of Genetic Engineering (SKLGE) and MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences, Shanghai, China; Department of Epidemiology, School of Public Health, Fudan University, Shanghai, China.
    99Weill Cornell Medicine, New York, NY, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY, USA; The WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA. Electronic address: chm2042@med.cornell.edu.
    Abstract

    We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.


    Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.

    KEYWORDS: AMR, BGC, NGS, antimicrobial resistance, built Environment, de novo assembly, global health, metagenome, microbiome, shotgun sequencing

    Publikations ID: 34043940
    Quelle: öffnen
     
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